PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000197904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family E2F/DP
Protein Properties Length: 183aa    MW: 20029.5 Da    PI: 9.1893
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000197904genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP88.54.7e-2878143171
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    r ++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  MDP0000197904  78 RFDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 143
                    6789******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-2976145IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.52E-1878141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-3478143IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-2580143IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
LKRKSDAVDC EAESSDRTTA PGYTDVGNSP LQTPMSTKVG KANKTSRLTK CSKSGPQTPA  60
SNVGSPSGAN VTPAGPCRFD SSLGLLTKKF INLIKHAEDG ILDLNKAADT LEVQKRRIYD  120
ITNVLEGIGL IEKKLKNRIQ WKGLDVSRTG DVDENYPSLQ AQVENLSIEE XRLDQQIRLL  180
RLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A5e-2973144274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1795061e-56AY179506.1 Populus alba E2F mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361438.11e-123PREDICTED: transcription factor E2FB-like isoform X1
RefseqXP_008361445.11e-123PREDICTED: transcription factor E2FB-like isoform X2
SwissprotQ9FV711e-66E2FB_ARATH; Transcription factor E2FB
TrEMBLM5WJS31e-114M5WJS3_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_06s0080g01110.t016e-94(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-63E2F transcription factor 1